Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Athaliana_AT1G06515 AT1G06515 |
Chr1 | 1990634 | 1992228 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Athaliana_AT1G06515.1 AT1G06515.1 |
High | No | 633 | OG0002823 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -24.076 AMFE: -0.620 GC content %: 38.863 | |
Athaliana_AT1G06515.2 AT1G06515.2 |
Low | No | 680 | OG0002823 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -24.279 AMFE: -0.616 GC content %: 39.412 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G06515.2 | SwissProt | 2021-04-01 | Q66J44 | 5.35e-4 |