GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT1G47820 AT1G47820	Chr1	17611905	17612613	v11	Arabidopsis thaliana (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT1G47820.1 AT1G47820.1	High	No	657	OG0065381		Get ORF Coding potential... Type: noncoding Potential: -0.198 Folding energies... MFEI: -22.070 AMFE: -0.612 GC content %: 36.073
Athaliana_AT1G47820.2 AT1G47820.2	High	No	629	OG0065382		Get ORF Coding potential... Type: noncoding Potential: -0.186 Folding energies... MFEI: -22.989 AMFE: -0.640 GC content %: 35.930

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).