GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT1G65490 AT1G65490	Chr1	24354646	24355490	v11	Arabidopsis thaliana (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT1G65490.1 AT1G65490.1	High	No	464	OG0015718		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -24.289 AMFE: -0.630 GC content %: 38.578
Athaliana_AT1G65490.2 AT1G65490.2	High	No	728	OG0015718		Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -23.036 AMFE: -0.640 GC content %: 35.989
Athaliana_AT1G65490.3 AT1G65490.3	High	No	515	OG0015718		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -23.825 AMFE: -0.620 GC content %: 38.447

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).