GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT1G80245 AT1G80245	Chr1	30174101	30175553	v11	Arabidopsis thaliana (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT1G80245.4 AT1G80245.4	High	No	1286	OG0015721		Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -24.417 AMFE: -0.624 GC content %: 39.114
Athaliana_AT1G80245.5 AT1G80245.5	High	No	1097	OG0015721		Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -24.731 AMFE: -0.615 GC content %: 40.201
Athaliana_AT1G80245.6 AT1G80245.6	High	No	1037	OG0015721		Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -24.417 AMFE: -0.607 GC content %: 40.212

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).