Athaliana AT2G04790
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT2G04790 AT2G04790 |
Chr2 | 1679307 | 1680543 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT2G04790.11 AT2G04790.11 |
High | No | 1009 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -22.716 AMFE: -0.642 GC content %: 35.382 | |
| Athaliana_AT2G04790.12 AT2G04790.12 |
High | No | 902 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -23.126 AMFE: -0.648 GC content %: 35.698 | |
| Athaliana_AT2G04790.16 AT2G04790.16 |
High | No | 870 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -23.621 AMFE: -0.640 GC content %: 36.897 | |
| Athaliana_AT2G04790.3 AT2G04790.3 |
High | No | 765 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -23.373 AMFE: -0.621 GC content %: 37.647 | |
| Athaliana_AT2G04790.4 AT2G04790.4 |
High | No | 857 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -23.664 AMFE: -0.652 GC content %: 36.289 | |
| Athaliana_AT2G04790.7 AT2G04790.7 |
High | No | 1040 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -22.452 AMFE: -0.640 GC content %: 35.096 | |
| Athaliana_AT2G04790.8 AT2G04790.8 |
High | No | 1017 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -22.675 AMFE: -0.648 GC content %: 35.005 | |
| Athaliana_AT2G04790.9 AT2G04790.9 |
High | No | 955 | OG0002828 | Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -22.712 AMFE: -0.636 GC content %: 35.707 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
