Athaliana AT2G04800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT2G04800 AT2G04800 |
Chr2 | 1687173 | 1687939 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT2G04800.1 AT2G04800.1 |
High | No | 595 | OG0009662 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -21.765 AMFE: -0.602 GC content %: 36.134 | |
| Athaliana_AT2G04800.2 AT2G04800.2 |
High | No | 767 | OG0009662 | Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -21.669 AMFE: -0.627 GC content %: 34.550 | |
| Athaliana_AT2G04800.3 AT2G04800.3 |
High | No | 662 | OG0009662 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -21.647 AMFE: -0.610 GC content %: 35.498 | |
| Athaliana_AT2G04800.4 AT2G04800.4 |
High | No | 538 | OG0009662 | Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -22.045 AMFE: -0.634 GC content %: 34.758 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
