Athaliana AT2G05185

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Athaliana_AT2G05185
AT2G05185
Chr2 1876899 1878322 v11 Arabidopsis thaliana (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Athaliana_AT2G05185.1
AT2G05185.1
High No 826 OG0015722
Coding potential...
Type: noncoding Potential: -0.979
Folding energies...
MFEI: -21.356 AMFE: -0.573
GC content
%: 37.288
Athaliana_AT2G05185.2
AT2G05185.2
High No 686 OG0024015
Coding potential...
Type: noncoding Potential: -0.948
Folding energies...
MFEI: -21.443 AMFE: -0.577
GC content
%: 37.172


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Athaliana_AT2G05185.png