Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Athaliana_AT2G29125 AT2G29125 |
Chr2 | 12523276 | 12524193 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Athaliana_AT2G29125.1 AT2G29125.1 |
Low | Yes | 918 | OG0015724 | Get ORF Coding potential... Type: noncoding Potential: -0.443 Folding energies... MFEI: -22.687 AMFE: -0.649 GC content %: 34.967 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT2G29125.1 | Rfam | 14.6 | mir-598 | 0.0017 |
Athaliana_AT2G29125.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Copia |