Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Athaliana_AT2G32200 AT2G32200 |
Chr2 | 13676389 | 13677306 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Athaliana_AT2G32200.1 AT2G32200.1 |
Low | No | 561 | OG0024034 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -20.784 AMFE: -0.561 GC content %: 37.077 | |
Athaliana_AT2G32200.2 AT2G32200.2 |
Low | No | 626 | OG0024034 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -20.543 AMFE: -0.538 GC content %: 38.179 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT2G32200.1 | SwissProt | 2021-04-01 | Q94C26 | 3.1e-6 |
Athaliana_AT2G32200.2 | SwissProt | 2021-04-01 | Q94C26 | 3.83e-6 |