Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Athaliana_AT2G34185 AT2G34185 |
Chr2 | 14434339 | 14436315 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Athaliana_AT2G34185.1 AT2G34185.1 |
Low | No | 808 | OG0024037 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -22.673 AMFE: -0.573 GC content %: 39.604 | |
Athaliana_AT2G34185.3 AT2G34185.3 |
Low | No | 1021 | OG0024037 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -23.330 AMFE: -0.602 GC content %: 38.786 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT2G34185.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Athaliana_AT2G34185.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |