Athaliana AT3G23170

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Athaliana_AT3G23170
AT3G23170
Chr3 8267920 8268961 v11 Arabidopsis thaliana (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Athaliana_AT3G23170.1
AT3G23170.1
Low No 1042 OG0065961
Coding potential...
Type: noncoding Potential: -1.200
Folding energies...
MFEI: -24.290 AMFE: -0.644
GC content
%: 37.716


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Athaliana_AT3G23170.1  SwissProt 2021-04-01 Q6NN02 1.11e-6


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Athaliana_AT3G23170.png