Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Athaliana_AT3G50550 AT3G50550 |
Chr3 | 18759348 | 18760711 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Athaliana_AT3G50550.1 AT3G50550.1 |
Low | No | 910 | OG0024062 | Get ORF Coding potential... Type: coding Potential: 0.253 Folding energies... MFEI: -23.022 AMFE: -0.600 GC content %: 38.352 | |
Athaliana_AT3G50550.2 AT3G50550.2 |
High | No | 379 | OG0024062 | Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -21.504 AMFE: -0.591 GC content %: 36.412 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT3G50550.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |