GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT3G51750 AT3G51750	Chr3	19196362	19197356	v11	Arabidopsis thaliana (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT3G51750.1 AT3G51750.1	Low	No	563	OG0015740		Get ORF Coding potential... Type: coding Potential: 0.079 Folding energies... MFEI: -20.355 AMFE: -0.582 GC content %: 34.991
Athaliana_AT3G51750.2 AT3G51750.2	Low	No	560	OG0015740		Get ORF Coding potential... Type: coding Potential: 0.040 Folding energies... MFEI: -20.839 AMFE: -0.595 GC content %: 35.000
Athaliana_AT3G51750.3 AT3G51750.3	High	No	654	OG0015740		Get ORF Coding potential... Type: noncoding Potential: -0.046 Folding energies... MFEI: -21.193 AMFE: -0.616 GC content %: 34.404

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).