Athaliana AT4G34265
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT4G34265 AT4G34265 |
Chr4 | 16402129 | 16403823 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT4G34265.1 AT4G34265.1 |
High | No | 882 | OG0001130 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -24.535 AMFE: -0.585 GC content %: 41.950 | |
| Athaliana_AT4G34265.2 AT4G34265.2 |
High | No | 850 | OG0001130 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -22.682 AMFE: -0.543 GC content %: 41.765 | |
| Athaliana_AT4G34265.3 AT4G34265.3 |
High | No | 960 | OG0001130 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -23.750 AMFE: -0.562 GC content %: 42.292 | |
| Athaliana_AT4G34265.4 AT4G34265.4 |
High | No | 895 | OG0001130 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -22.559 AMFE: -0.538 GC content %: 41.899 | |
| Athaliana_AT4G34265.5 AT4G34265.5 |
High | No | 620 | OG0001130 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -24.048 AMFE: -0.538 GC content %: 44.677 | |
| Athaliana_AT4G34265.6 AT4G34265.6 |
High | No | 766 | OG0001130 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -25.966 AMFE: -0.601 GC content %: 43.211 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
