Athaliana AT5G06265
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT5G06265 AT5G06265 |
Chr5 | 1905042 | 1908332 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Athaliana_AT5G06265.1 AT5G06265.1 |
High | No | 949 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -20.503 AMFE: -0.583 GC content %: 35.195 | |
| Athaliana_AT5G06265.10 AT5G06265.10 |
High | No | 1495 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -24.408 AMFE: -0.678 GC content %: 35.987 | |
| Athaliana_AT5G06265.2 AT5G06265.2 |
High | No | 1734 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -23.201 AMFE: -0.660 GC content %: 35.179 | |
| Athaliana_AT5G06265.3 AT5G06265.3 |
High | No | 1595 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -22.922 AMFE: -0.645 GC content %: 35.549 | |
| Athaliana_AT5G06265.5 AT5G06265.5 |
High | No | 882 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -20.748 AMFE: -0.581 GC content %: 35.714 | |
| Athaliana_AT5G06265.6 AT5G06265.6 |
High | No | 1960 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -22.903 AMFE: -0.656 GC content %: 34.898 | |
| Athaliana_AT5G06265.7 AT5G06265.7 |
High | No | 1340 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -23.157 AMFE: -0.640 GC content %: 36.194 | |
| Athaliana_AT5G06265.8 AT5G06265.8 |
High | No | 1487 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -23.887 AMFE: -0.669 GC content %: 35.709 | |
| Athaliana_AT5G06265.9 AT5G06265.9 |
High | No | 1210 | OG0002314 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -23.950 AMFE: -0.647 GC content %: 37.025 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
