Athaliana AT5G38197

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Athaliana_AT5G38197
AT5G38197
Chr5 15250974 15251320 v11 Arabidopsis thaliana (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Athaliana_AT5G38197.1
AT5G38197.1
Low No 347 OG0066497
Coding potential...
Type: noncoding Potential: -0.024
Folding energies...
MFEI: -21.499 AMFE: -0.592
GC content
%: 36.311


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Athaliana_AT5G38197.1  SwissProt 2021-04-01 Q43681 6.73e-11


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Athaliana_AT5G38197.png