GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT5G41763 AT5G41763	Chr5	16714509	16715882	v11	Arabidopsis thaliana (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT5G41763.1 AT5G41763.1	High	No	521	OG0015764		Get ORF Coding potential... Type: noncoding Potential: -1.398 Folding energies... MFEI: -26.276 AMFE: -0.588 GC content %: 44.722
Athaliana_AT5G41763.2 AT5G41763.2	High	No	425	OG0015764		Get ORF Coding potential... Type: noncoding Potential: -1.378 Folding energies... MFEI: -26.729 AMFE: -0.580 GC content %: 46.118
Athaliana_AT5G41763.3 AT5G41763.3	High	No	330	OG0015764		Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -25.576 AMFE: -0.524 GC content %: 48.788

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).