GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT5G44565 AT5G44565	Chr5	17951442	17953180	v11	Arabidopsis thaliana (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT5G44565.1 AT5G44565.1	High	No	686	OG0015765		Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -22.566 AMFE: -0.664 GC content %: 33.965
Athaliana_AT5G44565.2 AT5G44565.2	High	No	466	OG0015765		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -20.708 AMFE: -0.607 GC content %: 34.120
Athaliana_AT5G44565.3 AT5G44565.3	High	No	597	OG0015765		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -21.206 AMFE: -0.663 GC content %: 31.993

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).