GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Athaliana_AT5G49015 AT5G49015	Chr5	19868926	19870410	v11	Arabidopsis thaliana (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Athaliana_AT5G49015.1 AT5G49015.1	High	No	846	OG0009685		Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -24.835 AMFE: -0.684 GC content %: 36.288
Athaliana_AT5G49015.2 AT5G49015.2	High	No	680	OG0009685		Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -23.779 AMFE: -0.632 GC content %: 37.647
Athaliana_AT5G49015.3 AT5G49015.3	High	No	1079	OG0009685		Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -24.791 AMFE: -0.706 GC content %: 35.125

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).