Bnapus GSBRNA2T00033053001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Bnapus_GSBRNA2T00033053001
[ GSBRNA2T00033053001]
LK032179 202311 203047 v1 Brassica napus (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Bnapus_CDY25705
CDY25705
Low No 231 OG0113421
Coding potential...
Type: noncoding Potential: -0.785
Folding energies...
MFEI: -20.519 AMFE: -0.578
GC content
%: 35.498


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Bnapus_CDY25705  SwissProt 2021-04-01 Q5XF24 8.9e-7


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Bnapus_GSBRNA2T00033053001.png