GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Brapa_Brara.D00447 [ Brara.D00447]	A04	3328455	3330270	v1.3	Brassica rapa (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Brapa_Brara.D00447.1 Brara.D00447.1	High	No	951	OG0017458		Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -25.878 AMFE: -0.653 GC content %: 39.642
Brapa_Brara.D00447.2 Brara.D00447.2	High	No	861	OG0017458		Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -27.143 AMFE: -0.646 GC content %: 42.044
Brapa_Brara.D00447.3 Brara.D00447.3	High	No	785	OG0017458		Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -26.089 AMFE: -0.619 GC content %: 42.166

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).