GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstacei_Brast01G208900 [ Brast01G208900]	Chr01	13654774	13658828	v1.1	Brachypodium stacei (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstacei_Brast01G208900.1 Brast01G208900.1	High	No	3188	OG0028015		Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -26.807 AMFE: -0.698 GC content %: 38.394
Bstacei_Brast01G208900.2 Brast01G208900.2	High	No	2673	OG0028015		Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -28.373 AMFE: -0.684 GC content %: 41.489

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).