GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstacei_Brast01G244800 [ Brast01G244800]	Chr01	16785051	16786967	v1.1	Brachypodium stacei (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstacei_Brast01G244800.1 Brast01G244800.1	High	No	1194	OG0017130		Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -26.415 AMFE: -0.614 GC content %: 43.049
Bstacei_Brast01G244800.2 Brast01G244800.2	High	No	1137	OG0017130		Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -26.728 AMFE: -0.614 GC content %: 43.536
Bstacei_Brast01G244800.3 Brast01G244800.3	High	No	1082	OG0017130		Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -27.116 AMFE: -0.606 GC content %: 44.732

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).