GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstacei_Brast01G330100 [ Brast01G330100]	Chr01	24650982	24653512	v1.1	Brachypodium stacei (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstacei_Brast01G330100.1 Brast01G330100.1	High	No	1971	OG0010384		Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -28.721 AMFE: -0.630 GC content %: 45.561
Bstacei_Brast01G330100.2 Brast01G330100.2	High	No	1836	OG0010384		Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -29.390 AMFE: -0.638 GC content %: 46.078
Bstacei_Brast01G330100.3 Brast01G330100.3	High	No	1934	OG0010384		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.255 AMFE: -0.640 GC content %: 45.708
Bstacei_Brast01G330100.4 Brast01G330100.4	High	No	752	OG0107854		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -33.803 AMFE: -0.580 GC content %: 58.245
Bstacei_Brast01G330100.5 Brast01G330100.5	High	No	1856	OG0010384		Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -28.815 AMFE: -0.628 GC content %: 45.851

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).