Bstacei Brast02G235900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Bstacei_Brast02G235900 [ Brast02G235900] |
Chr02 | 17178570 | 17182838 | v1.1 | Brachypodium stacei (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Bstacei_Brast02G235900.1 Brast02G235900.1 |
High | No | 652 | OG0010386 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -29.908 AMFE: -0.559 GC content %: 53.528 | |
| Bstacei_Brast02G235900.2 Brast02G235900.2 |
High | No | 2109 | OG0010386 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -26.515 AMFE: -0.635 GC content %: 41.726 | |
| Bstacei_Brast02G235900.3 Brast02G235900.3 |
High | No | 658 | OG0010386 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -28.389 AMFE: -0.540 GC content %: 52.584 | |
| Bstacei_Brast02G235900.4 Brast02G235900.4 |
High | No | 683 | OG0010386 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -31.010 AMFE: -0.588 GC content %: 52.709 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
