GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstacei_Brast03G041900 [ Brast03G041900]	Chr03	2499703	2500621	v1.1	Brachypodium stacei (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstacei_Brast03G041900.1 Brast03G041900.1	High	No	649	OG0028039		Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -29.661 AMFE: -0.640 GC content %: 46.379
Bstacei_Brast03G041900.2 Brast03G041900.2	High	No	596	OG0028039		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -30.050 AMFE: -0.647 GC content %: 46.477

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).