GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstacei_Brast03G044100 [ Brast03G044100]	Chr03	2651185	2653616	v1.1	Brachypodium stacei (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstacei_Brast03G044100.1 Brast03G044100.1	High	No	1221	OG0028040		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -31.728 AMFE: -0.692 GC content %: 45.864
Bstacei_Brast03G044100.2 Brast03G044100.2	High	No	663	OG0028040		Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -37.074 AMFE: -0.672 GC content %: 55.204

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).