Bstacei Brast05G106800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Bstacei_Brast05G106800
[ Brast05G106800]
Chr05 10489849 10491734 v1.1 Brachypodium stacei (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Bstacei_Brast05G106800.1
Brast05G106800.1
High No 790 OG0108965
Coding potential...
Type: noncoding Potential: -0.525
Folding energies...
MFEI: -31.342 AMFE: -0.652
GC content
%: 48.101


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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