GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstacei_Brast08G214500 [ Brast08G214500]	Chr08	18595413	18604134	v1.1	Brachypodium stacei (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstacei_Brast08G214500.1 Brast08G214500.1	High	No	783	OG0017154		Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -29.144 AMFE: -0.615 GC content %: 47.382
Bstacei_Brast08G214500.2 Brast08G214500.2	High	No	515	OG0017154		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -31.029 AMFE: -0.608 GC content %: 51.068
Bstacei_Brast08G214500.3 Brast08G214500.3	High	No	645	OG0017154		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -30.868 AMFE: -0.630 GC content %: 48.992

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).