GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstricta_Bostr.14419s0026 [ Bostr.14419s0026]	Scaffold14419	182009	184406	v1.2	Boechera stricta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstricta_Bostr.14419s0026.1 Bostr.14419s0026.1	High	No	1083	OG0000389		Get ORF Coding potential... Type: noncoding Potential: -0.422 Folding energies... MFEI: -21.727 AMFE: -0.505 GC content %: 43.029
Bstricta_Bostr.14419s0026.2 Bostr.14419s0026.2	High	No	1128	OG0000389		Get ORF Coding potential... Type: noncoding Potential: -0.429 Folding energies... MFEI: -21.853 AMFE: -0.509 GC content %: 42.908
Bstricta_Bostr.14419s0026.3 Bostr.14419s0026.3	High	No	1175	OG0000389		Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -21.677 AMFE: -0.506 GC content %: 42.809
Bstricta_Bostr.14419s0026.4 Bostr.14419s0026.4	High	No	1130	OG0000389		Get ORF Coding potential... Type: noncoding Potential: -0.415 Folding energies... MFEI: -21.779 AMFE: -0.507 GC content %: 42.920

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).