GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstricta_Bostr.15774s0027 [ Bostr.15774s0027]	Scaffold15774	404105	405770	v1.2	Boechera stricta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstricta_Bostr.15774s0027.1 Bostr.15774s0027.1	High	No	1028	OG0017112		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -23.667 AMFE: -0.640 GC content %: 36.965
Bstricta_Bostr.15774s0027.2 Bostr.15774s0027.2	High	No	731	OG0017112		Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -21.341 AMFE: -0.584 GC content %: 36.525
Bstricta_Bostr.15774s0027.3 Bostr.15774s0027.3	High	No	808	OG0017112		Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -21.931 AMFE: -0.597 GC content %: 36.757

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).