GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstricta_Bostr.20129s0436 [ Bostr.20129s0436]	Scaffold20129	2393045	2394093	v1.2	Boechera stricta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstricta_Bostr.20129s0436.1 Bostr.20129s0436.1	High	No	601	OG0027946		Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -22.945 AMFE: -0.624 GC content %: 36.772
Bstricta_Bostr.20129s0436.2 Bostr.20129s0436.2	High	No	595	OG0027946		Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -23.008 AMFE: -0.625 GC content %: 36.807

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).