GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstricta_Bostr.29223s0084 [ Bostr.29223s0084]	Scaffold29223	650869	651871	v1.2	Boechera stricta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstricta_Bostr.29223s0084.1 Bostr.29223s0084.1	High	No	804	OG0027981		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -24.104 AMFE: -0.608 GC content %: 39.677
Bstricta_Bostr.29223s0084.2 Bostr.29223s0084.2	High	No	533	OG0027981		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -25.422 AMFE: -0.597 GC content %: 42.589

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).