GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstricta_Bostr.7128s0148 [ Bostr.7128s0148]	Scaffold7128	738919	740609	v1.2	Boechera stricta (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstricta_Bostr.7128s0148.2 Bostr.7128s0148.2	High	No	1335	OG0010382		Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -26.891 AMFE: -0.666 GC content %: 40.375
Bstricta_Bostr.7128s0148.3 Bostr.7128s0148.3	High	No	971	OG0010382		Get ORF Coding potential... Type: noncoding Potential: -0.471 Folding energies... MFEI: -27.580 AMFE: -0.650 GC content %: 42.430
Bstricta_Bostr.7128s0148.4 Bostr.7128s0148.4	High	No	883	OG0010382		Get ORF Coding potential... Type: noncoding Potential: -0.092 Folding energies... MFEI: -26.954 AMFE: -0.636 GC content %: 42.356
Bstricta_Bostr.7128s0148.5 Bostr.7128s0148.5	High	No	1002	OG0010382		Get ORF Coding potential... Type: noncoding Potential: -0.448 Folding energies... MFEI: -27.655 AMFE: -0.657 GC content %: 42.116

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).