GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bstricta_Bostr.8819s0168 [ Bostr.8819s0168]	Scaffold8819	1211778	1213339	v1.2	Boechera stricta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bstricta_Bostr.8819s0168.1 Bostr.8819s0168.1	High	No	935	OG0017125		Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -21.936 AMFE: -0.664 GC content %: 33.048
Bstricta_Bostr.8819s0168.2 Bostr.8819s0168.2	High	No	540	OG0017125		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -18.741 AMFE: -0.519 GC content %: 36.111
Bstricta_Bostr.8819s0168.3 Bostr.8819s0168.3	High	No	708	OG0017125		Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -24.110 AMFE: -0.686 GC content %: 35.169

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).