Bvulgaris BVRB 000350

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Bvulgaris_BVRB_000350
[ BVRB_000350]
0010.scaffold00043 355653 358733 v1.2 Beta vulgaris (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Bvulgaris_KMS96321
KMS96321
Low Yes 3081 OG0102724
Coding potential...
Type: noncoding Potential: -0.985
Folding energies...
MFEI: -22.454 AMFE: -0.740
GC content
%: 30.347


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Bvulgaris_KMS96321  Rfam 14.6 mir-166 5.5e-21


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Bvulgaris_BVRB_000350.png