Bvulgaris BVRB 001850

From GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ BVRB_001850]
0053.scaffold00196 797592 801500 v1.2 Beta vulgaris (Phytozome 13)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low No 3618 OG0102701
Coding potential...
Type: noncoding Potential: -0.102
Folding energies...
MFEI: -28.618 AMFE: -0.857
GC content
%: 33.389

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Bvulgaris_KMS96150  SwissProt 2021-04-01 O65282 1.92e-31
Bvulgaris_KMS96150  RepBase (RepeatMasker) 2014-01-31 LINE/L1; Simple_repeat

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).