Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Bvulgaris_BVRB_006540 [ BVRB_006540] |
0160.scaffold00471 | 152906 | 156120 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Bvulgaris_KMS95623 KMS95623 |
Low | No | 2841 | OG0027790 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -22.943 AMFE: -0.691 GC content %: 33.193 | |
Bvulgaris_KMS95624 KMS95624 |
Low | No | 1606 | OG0027790 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -22.833 AMFE: -0.678 GC content %: 33.686 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bvulgaris_KMS95624 | SwissProt | 2021-04-01 | Q9FXF2 | 4.04e-5 |
Bvulgaris_KMS95623 | SwissProt | 2021-04-01 | Q9ASQ6 | 8.98e-5 |