Bvulgaris BVRB 013800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_BVRB_013800 [ BVRB_013800] |
0493.scaffold01049 | 1946 | 4142 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_KMS94950 KMS94950 |
High | No | 576 | OG0027786 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -21.233 AMFE: -0.605 GC content %: 35.069 | |
| Bvulgaris_KMS94951 KMS94951 |
High | No | 850 | OG0027786 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -23.294 AMFE: -0.649 GC content %: 35.882 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
