Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Bvulgaris_BVRB_2g039130 [ BVRB_2g039130] |
2 | 28752796 | 28753710 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Bvulgaris_KMT17209 KMT17209 |
Low | No | 915 | OG0105468 | Get ORF Coding potential... Type: noncoding Potential: -0.355 Folding energies... MFEI: -25.071 AMFE: -0.634 GC content %: 39.563 | |
Bvulgaris_KMT17210 KMT17210 |
Low | No | 240 | OG0105469 | Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -22.667 AMFE: -0.633 GC content %: 35.833 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bvulgaris_KMT17209 | SwissProt | 2021-04-01 | Q9ZNT1 | 5.73e-8 |
Bvulgaris_KMT17210 | SwissProt | 2021-04-01 | Q9ZNT1 | 1.62e-7 |
Bvulgaris_KMT17209 | RepBase (RepeatMasker) | 2014-01-31 | Satellite |