GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bvulgaris_BVRB_3g058100 [ BVRB_3g058100]	3	13364670	13366069	v1.2	Beta vulgaris (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bvulgaris_KMT15841 KMT15841	Low	No	1300	OG0027885		Get ORF Coding potential... Type: noncoding Potential: -0.541 Folding energies... MFEI: -24.662 AMFE: -0.664 GC content %: 37.154
Bvulgaris_KMT15842 KMT15842	High	No	625	OG0027885		Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -21.968 AMFE: -0.624 GC content %: 35.200

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Bvulgaris_KMT15841	SwissProt	2021-04-01	Q8C8R3	1.25e-6

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).