Bvulgaris BVRB 3g066700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_BVRB_3g066700 [ BVRB_3g066700] |
Bvchr3_un.sca001 | 1169164 | 1171888 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_KMS99069 KMS99069 |
High | No | 2489 | OG0017089 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -25.400 AMFE: -0.669 GC content %: 37.967 | |
| Bvulgaris_KMS99070 KMS99070 |
High | No | 300 | OG0017089 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -20.900 AMFE: -0.502 GC content %: 41.667 | |
| Bvulgaris_KMS99071 KMS99071 |
High | No | 2552 | OG0017089 | Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -25.239 AMFE: -0.663 GC content %: 38.088 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
