Bvulgaris BVRB 5g102220

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Bvulgaris_BVRB_5g102220
[ BVRB_5g102220]
5 5896233 5897517 v1.2 Beta vulgaris (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Bvulgaris_KMT12280
KMT12280
High No 1285 OG0104891
Coding potential...
Type: noncoding Potential: -1.113
Folding energies...
MFEI: -26.374 AMFE: -0.674
GC content
%: 39.144


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Bvulgaris_BVRB_5g102220.png