Bvulgaris BVRB 5g110260
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_BVRB_5g110260 [ BVRB_5g110260] |
5 | 26268391 | 26282697 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_KMT11259 KMT11259 |
High | No | 730 | OG0017100 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -24.425 AMFE: -0.501 GC content %: 48.767 | |
| Bvulgaris_KMT11260 KMT11260 |
High | No | 447 | OG0017100 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -19.821 AMFE: -0.490 GC content %: 40.492 | |
| Bvulgaris_KMT11261 KMT11261 |
High | No | 578 | OG0017100 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -23.633 AMFE: -0.540 GC content %: 43.772 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
