Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Bvulgaris_BVRB_7g172840 [ BVRB_7g172840] |
7 | 40369197 | 40370381 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Bvulgaris_KMT05135 KMT05135 |
Low | Yes | 1042 | OG0103919 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -30.000 AMFE: -0.643 GC content %: 46.641 | |
Bvulgaris_KMT05136 KMT05136 |
High | No | 207 | OG0103920 | Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -29.614 AMFE: -0.639 GC content %: 46.377 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Bvulgaris_KMT05135 | Rfam | 14.6 | mir-598 | 1.0e-3 |