GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Bvulgaris_BVRB_8g195190 [ BVRB_8g195190]	8	34251656	34257980	v1.2	Beta vulgaris (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Bvulgaris_KMT02947 KMT02947	High	No	1266	OG0010362		Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -24.431 AMFE: -0.661 GC content %: 36.967
Bvulgaris_KMT02948 KMT02948	High	No	234	OG0010362		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -29.060 AMFE: -0.667 GC content %: 43.590
Bvulgaris_KMT02949 KMT02949	High	No	1102	OG0010362		Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -26.681 AMFE: -0.662 GC content %: 40.290

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).