Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Cannum_T459_32373 [ T459_32373] |
PGAv.1.6.scaffold681 | 1136822 | 1139469 | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Cannum_PHT63844 PHT63844 |
Low | No | 267 | OG0129807 | Get ORF Coding potential... Type: noncoding Potential: -0.387 Folding energies... MFEI: -23.708 AMFE: -0.581 GC content %: 40.824 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cannum_PHT63844 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Cannum_PHT63844 | SwissProt | 2021-04-01 | Q7A3E2 | 7.67e-7 |