Cbraunii CBR g11179

From GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ CBR_g11179]
BFEA01000161 1420449 1421174 v1 Chara braunii (Ensembl Plants 51)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low Yes 421 OG0131714
Coding potential...
Type: coding Potential: 1.329
Folding energies...
MFEI: -14.893 AMFE: -0.367
GC content
%: 40.618

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Cbraunii_GBG72249  Rfam 14.6 mir-598 0.0072
Cbraunii_GBG72249  RepBase (RepeatMasker) 2014-01-31 DNA/CMC-EnSpm; LTR/Copia; LTR/Gypsy; Simple_repeat

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).