Cbraunii CBR g12204

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Cbraunii_CBR_g12204
[ CBR_g12204]
BFEA01000169 906289 908458 v1 Chara braunii (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Cbraunii_GBG72630
GBG72630
Low No 2170 OG0131721
Coding potential...
Type: noncoding Potential: -1.268
Folding energies...
MFEI: -36.442 AMFE: -0.712
GC content
%: 51.198


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Cbraunii_GBG72630  SwissProt 2021-04-01 I1N2Z5 1.1e-10


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Cbraunii_CBR_g12204.png