Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Cbraunii_CBR_g37691 [ CBR_g37691] |
BFEA01000038 | 1411977 | 1412481 | v1 | Chara braunii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Cbraunii_GBG63333 GBG63333 |
Low | Yes | 505 | OG0131600 | Get ORF Coding potential... Type: coding Potential: 1.161 Folding energies... MFEI: -40.119 AMFE: -1.061 GC content %: 37.822 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cbraunii_GBG63333 | Rfam | 14.6 | mir-598 | 0.0019 |
Cbraunii_GBG63333 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/CMC-EnSpm; DNA/hAT-Tag1; LTR/Gypsy; RC/Helitron; Simple_repeat |